PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99410.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 169aa MW: 18839.3 Da PI: 7.8227

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.5e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cv+apyfpa++p+kfa vhk+FGasnv k+l++l+e++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+e l+ +lal+++ PIM99410.1 13 PCAACKLLRRRCSPQCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELEEHQRGDAVSSMVYEANARMRDPVYGCVGAISYLQQQIEGLRRQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e PIM99410.1 112 E 112 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MEEIGRKQGA SSPCAACKLL RRRCSPQCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LEEHQRGDAV SSMVYEANAR MRDPVYGCVG AISYLQQQIE GLRRQLALAQ AEVVHLKVRQ 120 AASGQATSPS DHGSPSSYNL SYSKPSFEMD MDHMAVEQAR YRETMWSCT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-67	LBD family protein