PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99444.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 456aa MW: 50259.1 Da PI: 6.4187

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	108	129	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F++ L +H r+H PIM99444.1 108 SCKECGKDFPSLRALSSHVRSH 129 6*******************99 PP
2	zf-C2H2	11.8	0.00075	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + + H+++H PIM99444.1 137 HNCKKCGKGFDSMRAMFGHMKSH 159 67*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEQGHVCKIS SKSCASGKSL GGHMRVHLAQ ISASKKAAKG KFEGKMEFED CDNQSNNTVL 60 SEEKIKNCNG DMDFGDVDTN NSYELRDNPK KSWRISKPKN GVSKKRASCK ECGKDFPSLR 120 ALSSHVRSHS MKNGEVHNCK KCGKGFDSMR AMFGHMKSHS KKLRAYHDAG ESLSDFENLC 180 LVRRKRSRIK YGDAANHYGS SLNASSGGVS EVGDVEEAAA CLMMLSRGVR DWNGIDLVNE 240 FDDDDDDLYF GGESSCKSKK IDGKDRSFVC VGDEISKMSG SIQKKVHEYD DLDHSFDGEN 300 EMKIDSEVSH EGLLGVENEY SVDKLKDESK SNHDLDLGKN SCENIANNLE IEQESGGVSI 360 VTSLELSKSK KHECPICFKV LSSGPALGGH KRAHYNAVAE NITNEMVTVN KETGEIYNGF 420 DLNFPIRVDE GTKGDLGVNL LRVERGLDHE ALVLTN

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEQGHVCKIS SKSCASGKSL GGHMRVHLAQ ISASKKAAKG KFEGKMEFED CDNQSNNTVL  60
SEEKIKNCNG DMDFGDVDTN NSYELRDNPK KSWRISKPKN GVSKKRASCK ECGKDFPSLR  120
ALSSHVRSHS MKNGEVHNCK KCGKGFDSMR AMFGHMKSHS KKLRAYHDAG ESLSDFENLC  180
LVRRKRSRIK YGDAANHYGS SLNASSGGVS EVGDVEEAAA CLMMLSRGVR DWNGIDLVNE  240
FDDDDDDLYF GGESSCKSKK IDGKDRSFVC VGDEISKMSG SIQKKVHEYD DLDHSFDGEN  300
EMKIDSEVSH EGLLGVENEY SVDKLKDESK SNHDLDLGKN SCENIANNLE IEQESGGVSI  360
VTSLELSKSK KHECPICFKV LSSGPALGGH KRAHYNAVAE NITNEMVTVN KETGEIYNGF  420
DLNFPIRVDE GTKGDLGVNL LRVERGLDHE ALVLTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-13	C2H2 family protein