PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM99923.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 844aa    MW: 94231.8 Da    PI: 6.4792
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM99923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-24143244199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  PIM99923.1 143 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 238
                 99*****************************7333.34459************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  PIM99923.1 239 VGVRRA 244
                 ***996 PP
2Auxin_resp1224.2e-40269351183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp +W+nSkWr+Lk
  PIM99923.1 269 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDADPNQWRNSKWRCLK 351
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MSASEVSIKG YNDTNEYNSG PGKGNSGAGK VDDETALYTE LWRACAGPLV TVPRENELVF  60
YFPQGHIEQV EASTNQSADQ QMPVYNLPSK ILCRVVNVNL KAEPDTDEVF AQIILMPEPN  120
QDENEVKKEP LPGPPPRFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT  180
QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG  240
VRRAMRQQSN APSSVISSHS MHLGVLATAW HAIQTKTMFT VYYKPRTSPA EFIVPYDQYM  300
ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGTEDADPN QWRNSKWRCL KVRWDETSTI  360
PRPERVSPWK IEPALSPPAL NPLPVPRPKR PRPSVLPSSP DSSVLTREGP SKMTVDPSPP  420
NGFQRVLQGQ ELSTLRGTFA ESNESESSDK PLLWNSSLDD EKMDVVSASR RYGSDKWFPV  480
GRPESSFTDL LSGFGSQINV SRDFCMAPGD QAISKRQAQE HDAKFSLIGN TWSMMPSSLS  540
LNLMDSNLKT HGQGTNSSYH TCGDVRYGAI RDFPLIPGPR GDNQQANWLM PPPISPYLQM  600
TTAQSREQMP KPVFAQPHDV MKPKEGNCKL FGIPLRSNSA SLEPTLSQKT ALIEPSGHMQ  660
HGMQSHQSPA IESDQKSDQS KGSKVVDNPV VNSEHEKQVQ SFHPIGRDRE SKGPSGSTRS  720
CTKVHKQGTA LGRSVDLAKF DNYDELIGEL DNLFEFNGEL KARNKNWLVV YTDDEDDMML  780
VGDDPWEEFC GMVRKILILT KEEVQRMNPG TFNSKGDEIS SVAQGMDAKE VKNLPPSSSS  840
PEDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389393KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein