PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99978.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 379aa MW: 41651.8 Da PI: 8.4755

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.2e-07	208	230	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H PIM99978.1 208 HYCQVCGKGFKRDANLRMHMRAH 230 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MMITGATPCY PNGQQIYEEV ISSSLESNSS APAAIAAQPS SFLYNLSLLK DKVHQVQSLA 60 TIFLSPDHGQ PPAPESTAVA IPTMTTLIQE IIMTASSMMF ACQQMTFSSH ATNNNNAATV 120 DFSSGRAVEE RGPSASAFFS DNWYSDNYNS SKSTDDHNNV TVEGNSSAKE LVLPKKKETN 180 DVSGGLNSPN NYDIVELDAA DLLAKYTHYC QVCGKGFKRD ANLRMHMRAH GDEYKSSAAL 240 TNPMKNSTNT SGESAGRDIL RKYSCPQEGC RWNKNHAKFQ PLKSMICVKN HYKRSHCPKM 300 YVCKRCNRKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF VGHTPAVGSL 360 TKAGNGAQNS SQMQVDQTR

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MMITGATPCY PNGQQIYEEV ISSSLESNSS APAAIAAQPS SFLYNLSLLK DKVHQVQSLA  60
TIFLSPDHGQ PPAPESTAVA IPTMTTLIQE IIMTASSMMF ACQQMTFSSH ATNNNNAATV  120
DFSSGRAVEE RGPSASAFFS DNWYSDNYNS SKSTDDHNNV TVEGNSSAKE LVLPKKKETN  180
DVSGGLNSPN NYDIVELDAA DLLAKYTHYC QVCGKGFKRD ANLRMHMRAH GDEYKSSAAL  240
TNPMKNSTNT SGESAGRDIL RKYSCPQEGC RWNKNHAKFQ PLKSMICVKN HYKRSHCPKM  300
YVCKRCNRKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF VGHTPAVGSL  360
TKAGNGAQNS SQMQVDQTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-109	C2H2 family protein