PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99980.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24692.2 Da PI: 9.0771

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PIM99980.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	95.2	1.1e-31	84	171	10	97
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++s+++e+ kLk+++e+Lqr qR+llG+dL++L++++L+++e+qLe+slk+iRs++++++l+q+++lq kek++ ++nkaL++k PIM99980.1 84 GKDIEQSSYREYLKLKSKYESLQRYQRQLLGDDLGPLNINDLEHIEHQLETSLKHIRSTRTQVMLDQLSDLQAKEKMMVDANKALERK 171 55668999*****************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SNMLKTLERY QKCSYGSLEV NHPGKDIEQS SYREYLKLKS KYESLQRYQR QLLGDDLGPL 120 NINDLEHIEH QLETSLKHIR STRTQVMLDQ LSDLQAKEKM MVDANKALER KGFFQPLDCN 180 SSLHIGQYND PASSSQMTAA TDVQNVNGLV PGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-102	MIKC_MADS family protein