PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN00311.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

Trihelix

Protein Properties

Length: 372aa MW: 41394.9 Da PI: 6.8896

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN00311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.3e-19	55	137	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+laLi+a++e++ +l++g+lk+ +W+ev++++ ++ gf +++++qC++k+e+l+kry+ + + ++++yf+ ++ PIN00311.1 55 WTHQETLALIQAYQEKWYSLKKGQLKAFQWDEVAANVaARCGFdepSKTSTQCRHKIEKLRKRYRSELQKPYP------NSWQYFELMD 137 **********************************966668865578***************98777665......3488888886 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MASSSSPSPS PPPRPLSLPP PPHSSSSSPE SKRLLLPPPG SKPLSPPKRS PPLPWTHQET 60 LALIQAYQEK WYSLKKGQLK AFQWDEVAAN VAARCGFDEP SKTSTQCRHK IEKLRKRYRS 120 ELQKPYPNSW QYFELMDQME RGPMPLNALP IAVVKSSSNN ANSNSNCSNH GYGSLYSSSA 180 DYYSYHNNIN NSGGDSGGSD ESEEKWNSVH GIEAATRNKA NSVNNIARRG GNSGVRITNR 240 DLMERGFGGN GNSVVRALRN PLNEKRKKQY YDGDDSEDDD DDDDGDDDED DVEEGGEKGG 300 GGAEIAAKIR GFADSFMKME DKKIEMMRET EMHRMEMEKK RTEMILEAQR KLIDTIGRAF 360 GANKKAKMAQ ET

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MASSSSPSPS PPPRPLSLPP PPHSSSSSPE SKRLLLPPPG SKPLSPPKRS PPLPWTHQET  60
LALIQAYQEK WYSLKKGQLK AFQWDEVAAN VAARCGFDEP SKTSTQCRHK IEKLRKRYRS  120
ELQKPYPNSW QYFELMDQME RGPMPLNALP IAVVKSSSNN ANSNSNCSNH GYGSLYSSSA  180
DYYSYHNNIN NSGGDSGGSD ESEEKWNSVH GIEAATRNKA NSVNNIARRG GNSGVRITNR  240
DLMERGFGGN GNSVVRALRN PLNEKRKKQY YDGDDSEDDD DDDDGDDDED DVEEGGEKGG  300
GGAEIAAKIR GFADSFMKME DKKIEMMRET EMHRMEMEKK RTEMILEAQR KLIDTIGRAF  360
GANKKAKMAQ ET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-25	Trihelix family protein