PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN00390.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family NF-YC
Protein Properties Length: 231aa    MW: 25161.3 Da    PI: 4.7097
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN00390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.7e-56391431102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv
  PIN00390.1  39 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 137
                 89*****998899************************************************************************************** PP

       NF-YC  97 prdelk 102
                 prde+k
  PIN00390.1 138 PRDEIK 143
                 ***975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MENNPQQSTA SAAAAYPPQA AGYPPQPPYQ HLLQQQQQQL QMFWTYQRQE IEQVNDFKNH  60
QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI  120
AAAITRTDIF DFLVDIVPRD EIKDEAATLG GIVGPPAAAS GVTGVPYYYP PMGQPMIGRP  180
AVPGVDPGVY VQGAPPPSQA WQSVWQTAGE DGSYASGGGS SSGQGNLDGQ G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-97NF-YC family protein