PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN00412.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28908.9 Da PI: 8.302

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN00412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.4e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ PIN00412.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	105.5	6.5e-35	77	169	6	98
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + s +e+++++++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l++ R++K+++++eq+eel++ke++l + nk+L+ k+ PIN00412.1 77 QDSISERETQNWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALTQARQRKTQIMMEQMEELRRKERQLGDMNKQLKIKV 169 4458999**********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGST 60 SMTQILERYQ RCCFNSQDSI SERETQNWYQ EVSKLKAKYE SLQRTQRHLL GEDLGPLSIK 120 ELQNLEKQLE GALTQARQRK TQIMMEQMEE LRRKERQLGD MNKQLKIKVS LEMSSLESEG 180 QGLRAFPCQW NQDTSAGTSS FPLQIPPSNP MEMEPEPVLE IGYHHYNLAE GSSVDRSMAL 240 DSNFFQGWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-100	MIKC_MADS family protein