PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN00687.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 156aa MW: 18253.2 Da PI: 9.9418

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN00687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.4	5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaev++iifs++g+lye+ss PIN00687.1 9 KRIENAACRQVTFSKRRNGLLKKAYELSVLCDAEVSLIIFSQKGTLYEFSS 59 79***********************************************96 PP
2	K-box	65.8	1.5e-22	82	155	10	83
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 e+++++l++e+a + ++ie L+++ R+llG +L+++s +eLq++ +qLe+slk+iRs+K +l++e+ie+lq k PIN00687.1 82 VEQHMQHLKHEVAMMSRKIELLESSYRKLLGHNLGTCSWEELQNIGEQLERSLKNIRSRKAQLFKEEIEKLQAK 155 5789********************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MVRGKVQMKR IENAACRQVT FSKRRNGLLK KAYELSVLCD AEVSLIIFSQ KGTLYEFSSS 60 DMQKTIQKYL ERTKEQYAGI DVEQHMQHLK HEVAMMSRKI ELLESSYRKL LGHNLGTCSW 120 EELQNIGEQL ERSLKNIRSR KAQLFKEEIE KLQAKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-71	MIKC_MADS family protein