PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN00701.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9855.66 Da    PI: 10.4852
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN00701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.1e-262411251
                HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                tfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  PIN00701.1  2 TFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 41
                9*************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    
MTFSKRRNGL LKKAYELSVL CDAEVALIIF SQKGRLYEFS SSKVKMKATM FRCKCLFDNS  60
NSTRNLKTGC EKSHLAFNIF LTKAFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-23MIKC_MADS family protein