PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN00839.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family YABBY
Protein Properties Length: 213aa    MW: 23702.1 Da    PI: 7.8646
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN00839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY240.82.9e-74151773170
       YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvsse 99 
                 +  +seq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ +   +a + hl++s+  +  ll+e +++ +nl  n+ + ++  t +   
  PIN00839.1  15 LSPNSEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGMLLPTANQLHLGHSFFSPqnLLDEIRNSPSNLLINQPNPNE--TLM--- 108
                 66789**********************************************9999999*****9986634777777777777666554443..333... PP

       YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +    +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  PIN00839.1 109 --PVRGIDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 177
                 ..45667899**999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MSSSSAFAPD HHHHLSPNSE QLCYVHCNFC DTVLAVSVPC TSLFKTVTVR CGHCTNLLSV  60
NMRGMLLPTA NQLHLGHSFF SPQNLLDEIR NSPSNLLINQ PNPNETLMPV RGIDELPKPP  120
VANRPPEKRQ RVPSAYNRFI KDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD  180
QPVKKPNVCQ QEGEDVLMKD GFLAPANVGV SPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-94YABBY family protein