PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN00860.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 347aa MW: 39096.5 Da PI: 5.3604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN00860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	3e-14	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l ++ G g+W+ +ar g+ R++k+c++rw +yl PIN00860.1 23 KGLWSPDEDDKLMNYMMTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70 678*******************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia +++ gRt++++k++w++ PIN00860.1 76 RGAFSPQEEELIIHLHSLLGNR-WSQIATRLP-GRTDNEIKNFWNS 119 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MRKPDPSATG KTNTTASPIK LRKGLWSPDE DDKLMNYMMT NGQGCWSDVA RNAGLQRCGK 60 SCRLRWINYL RPDLKRGAFS PQEEELIIHL HSLLGNRWSQ IATRLPGRTD NEIKNFWNST 120 IKKRLKMSSS SSTISPNTSD TSSLEPLDHH HGMVSEGLVM AMHDHNLMDS SSSSSAHPSS 180 SSLSSMHQYP IAAITSMIEH PYPDLDHNLN YMPTQGYFNA QPCTAPPEIG STIYDHNYSA 240 TFGDNQNIGM EGQLFNIPPL ESTNMVEESS KIQNLGQIRS DSNNNIVHNK NNMVDYQCNT 300 NINNIKVENE EGFGSYWEGE ELKMGEWDLE ELMKDAPSFP FLDFQVE

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MRKPDPSATG KTNTTASPIK LRKGLWSPDE DDKLMNYMMT NGQGCWSDVA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIIHL HSLLGNRWSQ IATRLPGRTD NEIKNFWNST  120
IKKRLKMSSS SSTISPNTSD TSSLEPLDHH HGMVSEGLVM AMHDHNLMDS SSSSSAHPSS  180
SSLSSMHQYP IAAITSMIEH PYPDLDHNLN YMPTQGYFNA QPCTAPPEIG STIYDHNYSA  240
TFGDNQNIGM EGQLFNIPPL ESTNMVEESS KIQNLGQIRS DSNNNIVHNK NNMVDYQCNT  300
NINNIKVENE EGFGSYWEGE ELKMGEWDLE ELMKDAPSFP FLDFQVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	5e-70	MYB family protein