PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01001.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 159aa MW: 18462.3 Da PI: 8.8517

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.4	5.9e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss PIN01001.1 9 KRIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59 79***********************************************96 PP
2	K-box	54.7	4.4e-19	59	123	34	98
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++llG +L+++sl+eLq + +qLe+slk+iRs+K +l++e ie+lq ek l een++L +k PIN01001.1 59 SSKKLLGHNLGTCSLEELQDIDEQLERSLKNIRSRKAQLFKEDIEKLQTEEKILLEENERLCEKA 123 5689*********************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MVRGKVEMKR IENASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSS 60 KKLLGHNLGT CSLEELQDID EQLERSLKNI RSRKAQLFKE DIEKLQTEEK ILLEENERLC 120 EKAEIWVVTG KWTGWAVFGL DPQEVLRSVN WKNFAMNPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	3e-45	MIKC_MADS family protein