PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01002.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24455.2 Da PI: 10.0349

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.3	8.6e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien s rqvtfskR+ng+ KKA ELSvLCdaeva+iifs++g+l+e+ss PIN01002.1 9 KRIENASSRQVTFSKRKNGLQKKACELSVLCDAEVALIIFSQKGTLFEFSS 59 79***********************************************96 PP
2	K-box	72.3	1.5e-24	81	169	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + e+++++l++e+a + ++ie L+++ R+llG +L+++s++eLq + +qL++slk+iRs+K++l++e i++lq kek l eenk+Lr+k PIN01002.1 81 AVEQHMQHLKHEAAMMSRKIELLENSRRKLLGHNLGTCSMEELQDIDKQLQRSLKNIRSRKDQLFKEDIQKLQTKEKFLLEENKRLREK 169 67999**********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MVRGKVEMKR IENASSRQVT FSKRKNGLQK KACELSVLCD AEVALIIFSQ KGTLFEFSSS 60 DMQKSIQKYL ELTKDRHTSI AVEQHMQHLK HEAAMMSRKI ELLENSRRKL LGHNLGTCSM 120 EELQDIDKQL QRSLKNIRSR KDQLFKEDIQ KLQTKEKFLL EENKRLREKN GPKQRHVLDK 180 EQEEIGSGSL STQCSDVGIE LCIGPPTTRK LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-76	MIKC_MADS family protein