PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01040.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 786aa    MW: 84372.4 Da    PI: 5.8907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.31.1e-1264157693374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lLl+cAeavs+++le a+++L ++s+la+p g++ qR+aayf eA++ar+++s+ ++y+alp+ + s    ++ ++a+++f+ +sP++kfsh+taNqa
  PIN01040.1 415 TLLLQCAEAVSADNLEDANRMLLEISQLATPFGTAAQRVAAYFSEAMSARIVSSCLGIYAALPTVPHS----QKMASAFQVFNGISPFVKFSHFTANQA 509
                 79*************************************************************99996....89999********************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s+e+le+tg+rL++fAe+lg+pfef + va+++ +l++e+L+v+++E
  PIN01040.1 510 IQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SAEALEATGKRLSDFAEKLGLPFEFFP-VADKVGNLTPERLNVSKRE 603
                 ************************************************....9**************************.7****************** PP

        GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                 a+aV++    h+l+d ++s +s    +L+l+++lsPkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll+rei+nv+ 
  PIN01040.1 604 AVAVHWLQ--HSLYDVTGSDTS----TLWLLQRLSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSREIRNVLG 695
                 *******9..999999999888....**********************.899*********************************************** PP

        GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   g +r  + + +++Wre+l+++GFk v+l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  PIN01040.1 696 VGGPSRSGEVK-FNNWREKLQHSGFKGVSLAGNAAAQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 769
                 *****888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    
MAAKAFALVG EGDNYANGGS CAGDTSPVLN DPNPAGTVAI INSLHSPQNQ GNKIVRKRAA  60
SEMELHTVGN VARFPRRTPT ATGSSDYAVG SLVNSPPNPT PPQVPNYSTM TMMLPSSTNF  120
NITMTSGKSG SGSDSTALAF SNSYTTASAS APALNNYPDS TISSSLSSQS LQTPSVCVFS  180
GLPLFPPDRN LGATGLQLSP ATGGCSSLGM EDTTAWIDGI IKDLIHSSNH VSIPQLILNV  240
REIIHPCNPN LAALLEYRLR SLTASTDDRR GREALPPAPS FQCNSGFRLH LQPDNLLPSQ  300
GLTADSLNHW PSANAGNTNY LQNNNPSTLS ATTTAALSFA APLTVFSNSD QSVNHASQPE  360
QLQEQQEKSP SAEQTTTATR TTSTSTTPSL ETIRDQRKQE TEQQQKDEEG LHILTLLLQC  420
AEAVSADNLE DANRMLLEIS QLATPFGTAA QRVAAYFSEA MSARIVSSCL GIYAALPTVP  480
HSQKMASAFQ VFNGISPFVK FSHFTANQAI QEAFEREDRV HIVDLDIMQG LQWPGLFHIL  540
ASRPGGPPFV RLTGLGNSAE ALEATGKRLS DFAEKLGLPF EFFPVADKVG NLTPERLNVS  600
KREAVAVHWL QHSLYDVTGS DTSTLWLLQR LSPKVVTVVE QDLSHAGSFL GRFVEAIHYY  660
SALFDSLGAC YGEESEERHV VEQQLLSREI RNVLGVGGPS RSGEVKFNNW REKLQHSGFK  720
GVSLAGNAAA QATLLLGMFP SDGYTLVEDN GALKLGWKDL CLLTASAWRP SFPAATASRH  780
FPSSIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein