PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01413.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 768aa MW: 85439.8 Da PI: 6.8675

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.7	5.4e-24	143	244	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el+ PIN01413.1 143 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELRAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGETGELC 238 99**************************86333.45679********************************************..449999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PIN01413.1 239 LGIRRA 244 ***996 PP
2	Auxin_resp	111.2	9.9e-37	269	350	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s++s+F v+Y+Pras+++F+v+++k+ k +++++ vG+Rfkm+f+++ds+err+ G+v+gv dldp+rWpnSkWr+L PIN01413.1 269 VANALSSNSAFAVFYSPRASHADFIVPYQKYIKCTTSPIPVGTRFKMRFDMDDSPERRFGGVVTGVGDLDPYRWPNSKWRCL 350 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MEIDLNHAVN ETEKNACEKG EESAPSSIFM ELWHACAGPL TSLPNKGNVV VYFPQGHMEQ 60 AASASPFPPM EMPTFDLPPQ IFCRVLDVQL LANKENDEVY TQLTLLPLPE LKGVISEGNE 120 SENVGVDEDG KGVLPAKSMS HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKEQRPS 180 QELRAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RGETGELCLG 240 IRRAARPRNG LPDSVIKNQN SYPNVLSPVA NALSSNSAFA VFYSPRASHA DFIVPYQKYI 300 KCTTSPIPVG TRFKMRFDMD DSPERRFGGV VTGVGDLDPY RWPNSKWRCL MVRWDDDIMS 360 NHQERVSPWD IDFSGNYAPL SVQSSPKMKK LRSNLHVTPQ GSPIPGGGAL LDFEESVRSS 420 KVLQGQENLG LVSSLYRGDR INHRQLDFGM QQTTPNPVVP NRMVNISYGE LVKSHAPTPT 480 TFTGFLESSN WFPKVLQGQE ICSLKSLAGK TDLNPYPWSK PERSYNVHNP HQRITTTPSF 540 YPLASEGARH MPIPHRAGQG PPLLPGFQAG NHVLTQPASI LSGARPTTDI GRVPHLTSEP 600 RTFEKTSAPP AASMMHFRNV KDDDNLKEKV PICKIFGFSL TEDPANGASK RSCTKVHKQG 660 SLVGRAIDLS RLHGYDDLLM ELERLFSMEG LLRDPNNGWR VLYTDSDNDM MVVGDDPWHE 720 FVKVVCKIHI YTQEEVEKLS VGMNSDDTKS CLEEAVAAAD SSPTVVRM

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MEIDLNHAVN ETEKNACEKG EESAPSSIFM ELWHACAGPL TSLPNKGNVV VYFPQGHMEQ  60
AASASPFPPM EMPTFDLPPQ IFCRVLDVQL LANKENDEVY TQLTLLPLPE LKGVISEGNE  120
SENVGVDEDG KGVLPAKSMS HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKEQRPS  180
QELRAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RGETGELCLG  240
IRRAARPRNG LPDSVIKNQN SYPNVLSPVA NALSSNSAFA VFYSPRASHA DFIVPYQKYI  300
KCTTSPIPVG TRFKMRFDMD DSPERRFGGV VTGVGDLDPY RWPNSKWRCL MVRWDDDIMS  360
NHQERVSPWD IDFSGNYAPL SVQSSPKMKK LRSNLHVTPQ GSPIPGGGAL LDFEESVRSS  420
KVLQGQENLG LVSSLYRGDR INHRQLDFGM QQTTPNPVVP NRMVNISYGE LVKSHAPTPT  480
TFTGFLESSN WFPKVLQGQE ICSLKSLAGK TDLNPYPWSK PERSYNVHNP HQRITTTPSF  540
YPLASEGARH MPIPHRAGQG PPLLPGFQAG NHVLTQPASI LSGARPTTDI GRVPHLTSEP  600
RTFEKTSAPP AASMMHFRNV KDDDNLKEKV PICKIFGFSL TEDPANGASK RSCTKVHKQG  660
SLVGRAIDLS RLHGYDDLLM ELERLFSMEG LLRDPNNGWR VLYTDSDNDM MVVGDDPWHE  720
FVKVVCKIHI YTQEEVEKLS VGMNSDDTKS CLEEAVAAAD SSPTVVRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein