PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01534.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 265aa    MW: 29955.5 Da    PI: 7.3033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l d++ ++G  +Wk+ ++  g++R++k+c++rw +yl
       PIN01534.1 13 KGAWSEEEDKKLRDYILRYGHWNWKLLPKFAGLKRCGKSCRLRWVNYL 60
                     79******************99************************97 PP
2Myb_DNA-binding51.42.6e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+el++++  +lG++ W++Ia++++ gRt++++k++w++
       PIN01534.1  66 RGNYTKEEEELIAKLQDELGNK-WSAIAAKLP-GRTDNEIKNFWHT 109
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MRTPCIDKNG LKKGAWSEEE DKKLRDYILR YGHWNWKLLP KFAGLKRCGK SCRLRWVNYL  60
KPGVKRGNYT KEEEELIAKL QDELGNKWSA IAAKLPGRTD NEIKNFWHTR LKKCSKTTRA  120
NSTQNSSRMT YNCKNSQEAL GGADLASEAQ KFSQKISNFQ ASDIPILESS GSSPWDSEDS  180
ASSSRSAQQL TISCLLENQL KAETYEHVEV LQDQINDEGL STSADSFGGF QESFWTEPFV  240
VDTYGQGDGF SRLDEGGFLP GYLFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.19e-55MYB family protein