PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01856.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 528aa    MW: 59122.2 Da    PI: 6.2413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.32.9e-931765272374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L++ Ae++++++l+l + +Larl+++  +p+g+p+qR+a+yf+eAL++ l++         ++++ ++++ +++++a+k+fs +sPi+ fs +taN
  PIN01856.1 176 VDELIRLAECFETNSLQLGHVILARLNQRlKTPTGKPLQRAAFYFKEALQSLLSG---------HARPVNSSDIVQTIKAQKTFSTISPIPMFSSFTAN 265
                 678*************************99*************************.........555566667************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 qa+lea+ g+  +H+iDfdi+ G+QW++L+++La+++  + +p lR+ +++s+  + ++e + ++e+L++fA+el+++fe++++  + +e l ++++++
  PIN01856.1 266 QAVLEALTGSMNIHVIDFDIGFGGQWASLMKELADKAasAAAPVLRVSAIVSE--DYATESRLIKENLTQFARELNISFEIDFVPIRIFEYLYFKAIKF 362
                 ***********************************99777899*********5..599*************************9999************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgr 292
                  + E++aV l+ ++++ +          + +L+ ++++sP+vvv+v+ e  +d ++ s+ +++++ le+ys++++sl  a++    ++++ +E +++ +
  PIN01856.1 363 IESEKVAVLLSPAIFHRV---------GTGFLNDLRRVSPHVVVHVDTEgqMDFGTRSYRQGVIDGLEFYSTVLESLeVANFNGGGDWMRRIETFVVFP 452
                 *************99998.........368*******************55556***********************667788888************* PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +i++ v + g++   r    + Wre+  +aG+++v ls++a+ qa++llrkv+++g++v +++++l+l+W+drp+v++SaWr
  PIN01856.1 453 KIMEEVEAVGRR---R----MAWREAAAAAGLRQVGLSQFAEFQAECLLRKVQVRGFHVVKRQAELLLCWHDRPIVATSAWR 527
                 **********98...4....45***********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MKVPFPANSD QNNSKPLNHT ITRTTFPATT PAGTTSTYEP KSVLELRRSP SPVADQKPIT  60
DTLSACNAFD PLHLEADRIL VNQHLLDWDS LMKEFDLHED SKPINQPNFH SDNRFHSPTL  120
TEFPPAVTSF DSNQFFPADF GLLSDTITPL SHNLFDGFSG DLNSGSGNWN VGCDYVDELI  180
RLAECFETNS LQLGHVILAR LNQRLKTPTG KPLQRAAFYF KEALQSLLSG HARPVNSSDI  240
VQTIKAQKTF STISPIPMFS SFTANQAVLE ALTGSMNIHV IDFDIGFGGQ WASLMKELAD  300
KAASAAAPVL RVSAIVSEDY ATESRLIKEN LTQFARELNI SFEIDFVPIR IFEYLYFKAI  360
KFIESEKVAV LLSPAIFHRV GTGFLNDLRR VSPHVVVHVD TEGQMDFGTR SYRQGVIDGL  420
EFYSTVLESL EVANFNGGGD WMRRIETFVV FPKIMEEVEA VGRRRMAWRE AAAAAGLRQV  480
GLSQFAEFQA ECLLRKVQVR GFHVVKRQAE LLLCWHDRPI VATSAWRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-129GRAS family protein