PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01860.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27695.8 Da    PI: 8.4452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.9e-181150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n+s r+ ++ kR++g++KKA EL +LC++e++vii+s+
  PIN01860.1 11 ITNNSERKASYKKRKKGLIKKATELTTLCGVEACVIIYSE 50
                89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MTRKKVTLAY ITNNSERKAS YKKRKKGLIK KATELTTLCG VEACVIIYSE YDAEPEVWPS  60
RPVAEAVLAW FNSLPEMERT RKMVNRESLT RQQIRKAQDQ LRRIQKENKR KELEIFMFQC  120
LAGKMGFEGF DLRDAAEMGW VVNQIVKNID SRMAALRRNG EAAAAVEAEV VAPPQATVGM  180
VDARAAVEVV VPPVGEENME SFPWNLVESP TGRGLGWDDG MVLPYPYIFE HANASTSAEP  240
KFGHGAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLAYITNNSERKASYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-43M-type_MADS family protein