PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN02056.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family Whirly
Protein Properties Length: 255aa    MW: 28020.1 Da    PI: 10.3186
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN02056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly202.35.9e-63792161138
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s++k+kaal+ ++++ptf++ +sg  k++r+G ++l++ +a++erkydWek+q+falsatev++l++l+sk+sceffhdp++ +sn+G+vrk+l+++ +
  PIN02056.1  79 SIFKGKAALSADPRLPTFSKSESGGYKVDRRGVIMLTFWPAIGERKYDWEKRQKFALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKTLSIKAH 177
                 79************************************************************************************************* PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                 +dGsG+f++l+v n+++k+n++f+vPv+ aefav+r ++
  PIN02056.1 178 ADGSGYFISLNVVNNILKTNDRFVVPVTTAEFAVMRAAF 216
                 ************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MPIGGSSRQK VSCFHTVVAM LKLSRLLLHS SSRIAFSGKS LFNEAASDFK LLRGITTQGG  60
MSTAMSNVGP DAKIFAPYSI FKGKAALSAD PRLPTFSKSE SGGYKVDRRG VIMLTFWPAI  120
GERKYDWEKR QKFALSATEV GSLISLGSKD SCEFFHDPSM LSSNAGQVRK TLSIKAHADG  180
SGYFISLNVV NNILKTNDRF VVPVTTAEFA VMRAAFTFAL PHIMGWDQYT NQLPYQASRS  240
SPKTVPELQS AEWDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-94Whirly family protein