PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN02362.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 426aa MW: 45887.9 Da PI: 8.1191

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN02362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PIN02362.1 81 WKCDKCSKKYAVQSDWKAHQKTC 103 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MSNITGDEGS LSSGEVQQNQ GKRQPQNQSI NASNPTSTNS NGSTSQQQQP PAKKKRNLPG 60 NPGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD 120 SFITHRAFCD ALAEENNKVN LGTMGPLGQN LQAQVPITTN TNTSMGLSEF TNPLKSLPQE 180 LIPIPFKPIN MFSTTSGALF GSPISMASSS GLQLSPNPVP QGYNYNQENK NLGPISGSAH 240 MSATALLQKA AQMGASASNS INSPMMQKSF VSGMAGPDHG PGPGYPYDNF QNRGFVNMEK 300 SPQEMAQIFE SGGGGGAAVN DVAVYGGILM GSEQNAAAGF LKSVVEVEEG SDRNSMRNVA 360 GGDDMTTVDF LGLGGSRPLN LDDQRLGFEG INQQRLMQMM HNNDNNNNSY NQNGNSDVEK 420 QLYNTF

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MSNITGDEGS LSSGEVQQNQ GKRQPQNQSI NASNPTSTNS NGSTSQQQQP PAKKKRNLPG  60
NPGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD  120
SFITHRAFCD ALAEENNKVN LGTMGPLGQN LQAQVPITTN TNTSMGLSEF TNPLKSLPQE  180
LIPIPFKPIN MFSTTSGALF GSPISMASSS GLQLSPNPVP QGYNYNQENK NLGPISGSAH  240
MSATALLQKA AQMGASASNS INSPMMQKSF VSGMAGPDHG PGPGYPYDNF QNRGFVNMEK  300
SPQEMAQIFE SGGGGGAAVN DVAVYGGILM GSEQNAAAGF LKSVVEVEEG SDRNSMRNVA  360
GGDDMTTVDF LGLGGSRPLN LDDQRLGFEG INQQRLMQMM HNNDNNNNSY NQNGNSDVEK  420
QLYNTF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	79	KKKRNLPGNPGDLTGIKKHYSRKHGEK
2	53	82	KKKRNLPGNPGDLTGIKKHYSRKHGEKKWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-39	C2H2 family protein