PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN02379.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27846.7 Da    PI: 9.2444
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN02379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.7e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++ rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl eys+
  PIN02379.1  9 KRIENNTSRQVTFSKRRAGLMKKTHELSVLCDAQIGLIVFSSKGKLTEYST 59
                79***********************************************96 PP
2K-box55.42.6e-19921751497
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 + + ++el+++k+e+ nLq ++ +++G+dL++ +++eL +LeqqLe+s+ k+R++K +ll+eq+e+l++  +++ e +++ +++
  PIN02379.1  92 NDQVYKELTRMKNETLNLQLSLQRYKGDDLSTVQFEELTELEQQLEQSVHKVRARKFQLLHEQLENLKRTIQRQAEFEQQQQQQ 175
                 457899**************************************************************9999888877766665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGKIEVKR IENNTSRQVT FSKRRAGLMK KTHELSVLCD AQIGLIVFSS KGKLTEYSTP  60
PLSMKQIIDR YVKTKGIPFP DRDNRAGAIA YNDQVYKELT RMKNETLNLQ LSLQRYKGDD  120
LSTVQFEELT ELEQQLEQSV HKVRARKFQL LHEQLENLKR TIQRQAEFEQ QQQQQAMTEL  180
KLVEQQPLLN QFPFFGEDLQ LGTTLPLHPH SYHLQPTHPN LQDSGLESGH NIVYSLGKDS  240
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-46MIKC_MADS family protein