PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN02672.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LSD

Protein Properties

Length: 175aa MW: 18217.3 Da PI: 8.5519

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN02672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.7	9e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA++V+CalC+ V PIN02672.1 7 CSGCRSLLMYPSGATNVCCALCNSV 31 ***********************98 PP
2	zf-LSD1	49.7	6e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV PIN02672.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	49.8	5.4e-16	83	107	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ PIN02672.1 83 CGSCHTTLMYPYGAPSVKCAVCQFI 107 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MQSQIVCSGC RSLLMYPSGA TNVCCALCNS VTTVPPPGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPAPNIAH INCGSCHTTL MYPYGAPSVK CAVCQFITNV NMGNVRVPIP 120 KHRPVGPPSA ASTPSTSAAL PNSQSQTVVV ENPMSVDKSG KLVSNVVVGV TTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-72	LSD family protein