PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN03123.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

TCP

Protein Properties

Length: 393aa MW: 41318.5 Da PI: 8.5362

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN03123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.7	1.1e-39	82	197	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ + s++ PIN03123.1 82 PVKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplflgga 180 56899***************************************************************9998777777777744444555556666666 PP TCP 89 ................k 89 + PIN03123.1 181 sgmlgfhhqltsnahfS 197 66666554333333331 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEFMEPHNKN QGGGGDKPQP EPGSGSGSAP PHGPFMGSIS IQQSRNLAHS SSSSTSTTTT 60 TNNPPTSAAA AADNNNNSAA KPVKKPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 120 KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGTTISAPPS KSAPLFLGGA 180 SGMLGFHHQL TSNAHFSQDP DENYMKKRFR EDTSGAASPK PGRPGVQDQE QASDPKAGSA 240 QASNFIPAPA MWAVAPAAAN VGNAFWMLPV TGSAATATVG QQEWQYKASS MQRIGGFEFP 300 GAGRFSPVQL GSMVLQQPQP QQPVQQLGLG VTETNMGMLA SMSAYNNNNS NNNSRIDLGM 360 NLEHHHHHHH QNQPQNSDGG GGGGGDENPK DSQ

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEFMEPHNKN QGGGGDKPQP EPGSGSGSAP PHGPFMGSIS IQQSRNLAHS SSSSTSTTTT  60
TNNPPTSAAA AADNNNNSAA KPVKKPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LHQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGTTISAPPS KSAPLFLGGA  180
SGMLGFHHQL TSNAHFSQDP DENYMKKRFR EDTSGAASPK PGRPGVQDQE QASDPKAGSA  240
QASNFIPAPA MWAVAPAAAN VGNAFWMLPV TGSAATATVG QQEWQYKASS MQRIGGFEFP  300
GAGRFSPVQL GSMVLQQPQP QQPVQQLGLG VTETNMGMLA SMSAYNNNNS NNNSRIDLGM  360
NLEHHHHHHH QNQPQNSDGG GGGGGDENPK DSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	7e-65	TCP family protein