PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN03685.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24822.5 Da    PI: 9.7366
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN03685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.1e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  PIN03685.1  9 KRIENVSSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59
                79***********************************************96 PP
2K-box72.11.7e-2478170798
       K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +s   e+++++l+ e+a + ++ie L+++qR+llG +L+++sl+eLq + +qLe+slk+iRs+K +l++e +e+ q kek l een++Lr+k+
  PIN03685.1  78 TSiELEQHMQHLKYEAALMSRKIELLENSQRKLLGHNLGTCSLEELQDIDKQLERSLKNIRSRKAQLFKEDVEKFQTKEKFLLEENERLREKI 170
                 33467899***********************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MVRGKVEMKR IENVSSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSY  60
NMQKSIQKYL ERTKEQRTSI ELEQHMQHLK YEAALMSRKI ELLENSQRKL LGHNLGTCSL  120
EELQDIDKQL ERSLKNIRSR KAQLFKEDVE KFQTKEKFLL EENERLREKI GLKQRHEHEK  180
VQQEIGSCSR STLCSEVGTE LFIGPPTTGN LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-78MIKC_MADS family protein