PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN04042.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 221aa    MW: 24502.6 Da    PI: 6.9904
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN04042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.1e-4081091101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r++a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++k
  PIN04042.1   8 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRSEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQLMQVK 106
                 7*************************99********************************************************************999 PP

      DUF260  99 eel 101
                 ++l
  PIN04042.1 107 AQL 109
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MATGTGSPCG ACKFLRRKCA ADCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVP  60
DRSEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLMQVKAQLA QTLIDQSSRN  120
GDQNQWPGNH VGPAGFTEGS SSCPNNFPNY MNYSNISPQS SLDSIDQQSD HIGMNGMQEI  180
QSSRDINEIA TFQQYYNKKR PSQIDLNELQ ELAFRMMKNE N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-58LBD family protein