PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN04076.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 33312.5 Da PI: 5.887

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN04076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.5e-18	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PIN04076.1 86 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139 456899***********************************************9 PP
2	HD-ZIP_I/II	129.4	1.5e-41	85	177	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k+ene+L++++++L++e+++ PIN04076.1 85 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYELLKRQFEAIKAENEALQAQNQKLHAEIMA 177 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MTCSREMAFF HSNFMLQTPH EDDHNHPSTS LPPMLPSCNP QDFHGVASLL AKRSSMAFST 60 GIDICEEINN HGEDELSDDG SQIGEKKRRL NMEQVKTLEK NFELGNKLEP ERKMQLARAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYELL KRQFEAIKAE NEALQAQNQK LHAEIMALKT 180 REPTESINLN KETEGSCSNR SENSSEIKLD ISRNPAIDSP LSTNPMPLFP PSLSRPNNGV 240 AQQFFHSSSR PEIQCQKMDQ TVKEESLCNM FCGMDDQTGF WPWLEQQQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-125	HD-ZIP family protein