PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN04939.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

NF-YC

Protein Properties

Length: 261aa MW: 29346.3 Da PI: 5.8747

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN04939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.5	1.2e-55	77	181	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw +q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+ PIN04939.1 77 QLQTFWVNQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 175 89***9988889********************************************************************************* PP NF-YC 97 prdelk 102 prdelk PIN04939.1 176 PRDELK 181 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MAHLDQRQQF THQNQQQQQP EVGQMAYAAT YQTAPVVAAT TPAAAVSSPT QPPATFAPQQ 60 QLPYQPQHFP SQQQQQQLQT FWVNQMQEIE QTTDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVVFAKAC EMFILELTLR SWIHTEENKR RTLQKNDIAA AISRTDVFDF LVDIIPRDEL 180 KEEGLGITKG AIPLVGSPPD ALPYYYIPPQ GPVGAPGMMM GKPVDQAAMY ANQQPRPSIP 240 FMPWPQPHAQ QPPTEHQQND S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	6e-81	NF-YC family protein