PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN04940.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 524aa    MW: 59200.1 Da    PI: 4.712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN04940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.71.5e-1051465171374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfs 94 
                 lv+lLl+cAeav  +d++la+++L+++   +sp gd++qR+ ++f+ +L++rl+   +++    + s+   ++      +e++ a++l+++++P++ f+
  PIN04940.1 146 LVHLLLACAEAVGCRDTKLADSILTQIWPCVSPWGDSLQRVSHCFAMGLKSRLSL-LQNVNPNGSFSSRG-NDvslitREEKVEAFTLLHQTTPYIAFG 242
                 68***************************************************98.44444333333333.22356778899999999*********** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                 +l+aN aI +a++g+e +HiiD+++++ lQW ++ ++La+R+     +lRiTg+   +  ++ ele+ ++ L + A++l+ ++ef++l+++ +  +l+ 
  PIN04940.1 243 FLAANDAIFQAASGKEFLHIIDLGMEHILQWTSFVRSLACRTeITLKTLRITGIIGDQ--DRLELERSANGLCEEANALEFSLEFHFLAEQvSPLSLTR 339
                 ******************************************55567*******9955..9**************************744445556789 PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                 e+L+++ +Eal Vn++++lh+ ++es  + +   ++L+ +k+ +P +v+vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s eri++E++ +
  PIN04940.1 340 EKLNLRDEEALFVNSIMHLHKHVKESRGSLK---TILQSIKKFNPSLVTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPERIMIEKFHF 435
                 9*********************987776666...9**************************************************************** PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++ei+nvvaceg++r+erhe++ +Wr++l+++GF+ v  ++k  ++a+++++ ++sdgy+v +e+g+l lgWk+rp++ +SaW+
  PIN04940.1 436 AEEICNVVACEGSNRIERHERADQWRRQLGRCGFQVV--GSKCLNEARMMVSGYGSDGYTVVCEKGCLHLGWKGRPIMLASAWQ 517
                 ***********************************97..6899****************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MEAMMNQWLT VPTFKNLNQN SAIRQFCPAR VEQEQVGEWG EELLEEELEI WPHYVNETPQ  60
LAPSEVEEIV DTFFNVECYQ KDNTDKFQEE GPQDFSLIDD VYYGSTDPMI IEGDELEGCS  120
PSDDLVLLGN HVENVITIGV DQGLHLVHLL LACAEAVGCR DTKLADSILT QIWPCVSPWG  180
DSLQRVSHCF AMGLKSRLSL LQNVNPNGSF SSRGNDVSLI TREEKVEAFT LLHQTTPYIA  240
FGFLAANDAI FQAASGKEFL HIIDLGMEHI LQWTSFVRSL ACRTEITLKT LRITGIIGDQ  300
DRLELERSAN GLCEEANALE FSLEFHFLAE QVSPLSLTRE KLNLRDEEAL FVNSIMHLHK  360
HVKESRGSLK TILQSIKKFN PSLVTVVEQD ANHNGPFFLG RFLESLHYYS AIFDSLEASL  420
PRNSPERIMI EKFHFAEEIC NVVACEGSNR IERHERADQW RRQLGRCGFQ VVGSKCLNEA  480
RMMVSGYGSD GYTVVCEKGC LHLGWKGRPI MLASAWQVHN MSPP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-73GRAS family protein