PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN05197.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 461aa MW: 47980.8 Da PI: 7.8358

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN05197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PIN05197.1 22 FVCEICNKGFQRDQNLQLHRRGH 44 89*******************88 PP
2	zf-C2H2	11.4	0.001	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PIN05197.1 98 WKCDKCSKKYAVQSDWKAHSKIC 120 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKDVKK 60 RVYVCPEPSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC 120 GTREYKCDCG TLFSRRDSFI THRAFCDALA GESTKVQPAA APPNADEDKK TEAVVPSSPP 180 STAAAAAAAA PPPPPPSASE APPAAAVPSS TDVASCSLPD KNPDLLESTD PDPDTCPCPN 240 TIRIFEEIRP TLTNLIAGCS SSSTSSSNGS SSSNIFSSLF ASSTSSGSLQ SQATGFTNLF 300 QTVACPDSTR DAVPSSSSEP IALRLAVNQG SSLAGQEPRQ YAPAAMSATA LLQKAAQMGA 360 AASNGSLLRA LGIVSSSSSS SPNGTEQQNK CDGAGLGLGL ACDNGSGLKE LMLGTPSVFG 420 PKHTTLDLLG LGMAASGGST DGLSALMTSI NGGGREFGGL E

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKDVKK  60
RVYVCPEPSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC  120
GTREYKCDCG TLFSRRDSFI THRAFCDALA GESTKVQPAA APPNADEDKK TEAVVPSSPP  180
STAAAAAAAA PPPPPPSASE APPAAAVPSS TDVASCSLPD KNPDLLESTD PDPDTCPCPN  240
TIRIFEEIRP TLTNLIAGCS SSSTSSSNGS SSSNIFSSLF ASSTSSGSLQ SQATGFTNLF  300
QTVACPDSTR DAVPSSSSEP IALRLAVNQG SSLAGQEPRQ YAPAAMSATA LLQKAAQMGA  360
AASNGSLLRA LGIVSSSSSS SPNGTEQQNK CDGAGLGLGL ACDNGSGLKE LMLGTPSVFG  420
PKHTTLDLLG LGMAASGGST DGLSALMTSI NGGGREFGGL E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-97	C2H2 family protein