PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN06514.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 24996.7 Da    PI: 8.488
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN06514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl++yss
  PIN06514.1  9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFDYSS 59
                68***********************************************96 PP
2K-box53.51e-18821711099
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +  +++  + ++  + ke+  L +e+++l+Ge+L+ L +++L++Le+ +e++l+++ ++Kne l+++i++l+ ++ el een+ L+++ e
  PIN06514.1  82 QPLHTQMGSSNHGMISKELTDLTTELKQLMGEELQGLGMNDLMKLEKMVETGLSRVGKTKNEKLFTEISKLKTRQAELIEENEWLKQQAE 171
                 5556777778888899**********************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFDYSSS  60
SMMQLIQRHN MQSEKSNKFG QQPLHTQMGS SNHGMISKEL TDLTTELKQL MGEELQGLGM  120
NDLMKLEKMV ETGLSRVGKT KNEKLFTEIS KLKTRQAELI EENEWLKQQA EKFDCTRNAM  180
EQGSSVESMT NSLGLVHCPE EEDRAVSDTS LKLGLPFSNG N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-70MIKC_MADS family protein