PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN06533.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 25026.6 Da PI: 9.6813

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN06533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95	3.3e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s PIN06533.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	82.6	8.7e-28	79	171	7	98
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ e+++++l++e+a + k+ie+L+ ++R+llGe+L+ +s++eLqqLeqqLe+s+++iR++K++++++qie+l++k k+l en +L +k+ PIN06533.1 79 NNpPPEHNMQHLKHEAASMMKKIEQLEASKRKLLGEGLSACSIEELQQLEQQLERSVNNIRARKMQVYKQQIEQLKEKGKALAAENAMLCEKF 171 33478999*********************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 SMHETIERYQ KHTKEMQANN PPPEHNMQHL KHEAASMMKK IEQLEASKRK LLGEGLSACS 120 IEELQQLEQQ LERSVNNIRA RKMQVYKQQI EQLKEKGKAL AAENAMLCEK FGQQNQQGGS 180 SEERALAPQP SAEISEVSDV ETELFIGPPE TRNKRPFQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	7e-90	MIKC_MADS family protein