PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN06594.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25452.5 Da    PI: 10.2468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN06594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.9e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  PIN06594.1  9 KRIENASTRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSQKGRLYEFSS 59
                79***********************************************96 PP
2K-box70.26.5e-2480171899
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   +e+++++l++e a + ++ie L+++ R+llG +L+++s++eLq + +qL+ slk+iRs+K +l++e+i +lq kek l een++Lr+k++
  PIN06594.1  80 MESEQHMQHLKHETAMISRKIELLENSRRKLLGHNLGTCSMEELQDIDKQLQGSLKNIRSRKAQLFKEEIGKLQTKEKFLLEENERLREKIM 171
                 37899*************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MVRGKVEMKR IENASTRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSQ KGRLYEFSSS  60
DMQRSIQKYL ELTKERHASM ESEQHMQHLK HETAMISRKI ELLENSRRKL LGHNLGTCSM  120
EELQDIDKQL QGSLKNIRSR KAQLFKEEIG KLQTKEKFLL EENERLREKI MKYLQIGLKQ  180
RHVQEKVGQQ EIGSCSRSTQ CSEVVTELFI GPPTAKKIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-75MIKC_MADS family protein