PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN06827.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 184aa    MW: 20463.3 Da    PI: 8.9106
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN06827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.81.6e-37381371100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rr+Ca++C lapyfpa+++k+f nvhk FG+ nv+k+lk++++++r++ m+s+++eA++ra dPv G++++i++l+++++   +el+++ +
  PIN06827.1  38 ACAACKHQRRRCAPNCLLAPYFPANKQKEFLNVHKHFGVGNVVKTLKNVDPNNRRNSMASVIFEANMRAIDPVGGCCRFIRDLEKRIQFYTSELDSVLK 136
                 7*******************************************************************************************9998766 PP

      DUF260 100 e 100
                 +
  PIN06827.1 137 Q 137
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MNTTNNIQNT TIKPQASKSD GPSPPWPVSG GGGAGAQACA ACKHQRRRCA PNCLLAPYFP  60
ANKQKEFLNV HKHFGVGNVV KTLKNVDPNN RRNSMASVIF EANMRAIDPV GGCCRFIRDL  120
EKRIQFYTSE LDSVLKQIAF HRWLNGKRVN SDVCDQDLVN VEVPEEQFLN GKVAENIKPD  180
VEKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-31LBD family protein