PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN07282.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ERF
Protein Properties Length: 238aa    MW: 26940.1 Da    PI: 8.1854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN07282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-1998148255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  PIN07282.1  98 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAAMAYDQAAFAMRG 148
                 69*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDSSFFQFQN QYPFSHYTPA PASHSDEPLS WKYDELSLPF NVNDSEEMLL YGVLSQTAVK  60
ESSETNSNSN SNFNFNYSCK EEEVSSYAKK GEKNREKSYR GVRRRPWGKF AAEIRDSTRN  120
GVRVWLGTFD SAEAAAMAYD QAAFAMRGCA AVLNFPVERV KESLKELKCG VEEGCSPVIA  180
LKKRHSMRKK KNSVLRRRKS NSVEVNSNKV ENVMVLEDLG VEYLEALLSC SSSSSQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189106KKGEKNREKSYRGVRRRP
2182199KKRHSMRKKKNSVLRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-52ERF family protein