PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN07502.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 481aa MW: 50646.9 Da PI: 8.0449

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN07502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C +G+rC+F+H++ PIN07502.1 51 EEPDCIYYLRTGFCGFGNRCRFNHPR 76 5799********************96 PP
2	zf-CCCH	37.2	5.1e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG CkyG++Ck++H++ PIN07502.1 98 HPVCQYYMRTGMCKYGASCKYHHPK 122 689********************96 PP
3	zf-CCCH	36.5	8.2e-12	142	168	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ PIN07502.1 142 PGERECSYYIKTGQCKFGATCKFHHPQ 168 5789*********************97 PP
4	zf-CCCH	37.3	4.6e-12	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H+p PIN07502.1 303 PGQAECQYYLRTGDCKFGATCKYHHPP 329 5789*********************97 PP
5	zf-CCCH	37.8	3.1e-12	351	375	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G+Ck+G++CkF H++ PIN07502.1 351 APLCSHYAQNGICKFGPSCKFDHPM 375 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MERYSGTQAM DAVPVDPVAE WAPPGGETGL EEPMWQLGLG GGPESYPERP EEPDCIYYLR 60 TGFCGFGNRC RFNHPRDRSM AMGAIRAGGG EYPERVGHPV CQYYMRTGMC KYGASCKYHH 120 PKQAVGSSAP VPLNIYGYPL RPGERECSYY IKTGQCKFGA TCKFHHPQPA GLEGPTPAPA 180 PGPGPLAAPT VYPTVQSPSV QSSQQYGLIQ GNWPVARPAM LPGYGPMLLP PGVVPVPGWT 240 PYPAPLSPVA SASTQPTVGA NPLYGITQLS PSATSYTGPY LSITSSAGPS SSSQKEHSFP 300 ERPGQAECQY YLRTGDCKFG ATCKYHHPPD LRASRTSLVL SPVGLPLRPG APLCSHYAQN 360 GICKFGPSCK FDHPMRTLSY SPSASSLTDM PVAPYPVGST NATLAPSSSS SDLRPELLSG 420 FSKDALSSQM SSMNSSSASV GSAFSKSGAV SQSTIQQSGQ GSISTSGGSS TSHGGEVHMS 480 S

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MERYSGTQAM DAVPVDPVAE WAPPGGETGL EEPMWQLGLG GGPESYPERP EEPDCIYYLR  60
TGFCGFGNRC RFNHPRDRSM AMGAIRAGGG EYPERVGHPV CQYYMRTGMC KYGASCKYHH  120
PKQAVGSSAP VPLNIYGYPL RPGERECSYY IKTGQCKFGA TCKFHHPQPA GLEGPTPAPA  180
PGPGPLAAPT VYPTVQSPSV QSSQQYGLIQ GNWPVARPAM LPGYGPMLLP PGVVPVPGWT  240
PYPAPLSPVA SASTQPTVGA NPLYGITQLS PSATSYTGPY LSITSSAGPS SSSQKEHSFP  300
ERPGQAECQY YLRTGDCKFG ATCKYHHPPD LRASRTSLVL SPVGLPLRPG APLCSHYAQN  360
GICKFGPSCK FDHPMRTLSY SPSASSLTDM PVAPYPVGST NATLAPSSSS SDLRPELLSG  420
FSKDALSSQM SSMNSSSASV GSAFSKSGAV SQSTIQQSGQ GSISTSGGSS TSHGGEVHMS  480
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-124	C3H family protein