PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN07560.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 556aa    MW: 62227.4 Da    PI: 6.5067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN07560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.94.7e-871935543374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                   Ll+cAe v++++  +a +lL +  +++sp g+++qRla+yf +AL +++ r +++      +s+   + ++   + l + ++  P+ ++++++  q+
  PIN07560.1 193 VNLLSCAEKVDNEQYDRAGKLLDECYKMSSPIGSTIQRLAFYFIQALYEKVGRVTPRG----LCSHPL-EAVIWPSMLLLAIHKGYPLSQITNFAGIQT 286
                 579**************************************************33332....233332.2356666666678999************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 Il+ v +++++H+iD++i  G+++  L+qaL +R++ p  +lRiT++g    +ske +eetg+rL +fAe+l+++f+f+v+++ ++ dl+ + ++v pg
  PIN07560.1 287 ILDHVVEARKIHVIDLEIRSGIHYTILIQALVDRSKHPVeHLRITALGT---KSKEIMEETGKRLMSFAESLKLSFSFDVVMVADVLDLKESLFKVVPG 382
                 ***********************************66655*********...689******************************************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 E++aV+ +++l+ l+ + ++le+    ++k++k+l+P v++++e ea++ns++F  rf+e+l yy alfds+++ + +++ +r+ vE  ++g +i+nv+
  PIN07560.1 383 ETVAVHAAYALMGLVGRVGCLEH----IVKVIKDLNPCVMIIAEMEANCNSPTFIGRFVESLFYYGALFDSFAECMKNDETNRREVELTCIGSSIRNVL 477
                 ***************88888888....************************************************************************ PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a+eg+er+ rh + + Wr+ l ++G  +++ls + ++qa+++l+ ++ s+   v+ + ++l+ gWk+ pL s+SaW+
  PIN07560.1 478 AAEGDERKIRHMSISVWRAFLARFGIVEIELSMSCVDQAHMVLQGFPsSRSCAVDMNGKCLIVGWKGTPLSSLSAWK 554
                 ***********************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MSDMNKDVSN MISDTNNDVS DMVLGSIQQH YSKMFPHFTR SFSDYYNMPT NAENGNDKFI  60
SQGTSSHGVE ELESFATFCN LDDLNLDDVI SQPFQSFDDE IISVRPSNAK EDYSASFHIL  120
RKHKRKCPKL DQNNAIVSSR NSVIPTLSTE AIIELAAENF IQSASKSSKK LSMFNHQYSS  180
SSLSHSKDVQ LIVNLLSCAE KVDNEQYDRA GKLLDECYKM SSPIGSTIQR LAFYFIQALY  240
EKVGRVTPRG LCSHPLEAVI WPSMLLLAIH KGYPLSQITN FAGIQTILDH VVEARKIHVI  300
DLEIRSGIHY TILIQALVDR SKHPVEHLRI TALGTKSKEI MEETGKRLMS FAESLKLSFS  360
FDVVMVADVL DLKESLFKVV PGETVAVHAA YALMGLVGRV GCLEHIVKVI KDLNPCVMII  420
AEMEANCNSP TFIGRFVESL FYYGALFDSF AECMKNDETN RREVELTCIG SSIRNVLAAE  480
GDERKIRHMS ISVWRAFLAR FGIVEIELSM SCVDQAHMVL QGFPSSRSCA VDMNGKCLIV  540
GWKGTPLSSL SAWKFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-56GRAS family protein