PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN07703.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26436.2 Da    PI: 9.6556
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN07703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.9e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                kri+n++ rqvtfskRr g+lKKA+EL +LCdaev viifsstg+l+e+s+
  PIN07703.1  9 KRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGRLHEFSN 59
                79***********************************************95 PP
2K-box76.76.2e-2680171899
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ++ +++ + +q+e+a+L++++ +Lq+++R+l+Ge+L  + +++L  Le+qLe sl+ +R kK+++l+e+i+el +k   ++e+n +L kk++
  PIN07703.1  80 RNPASEIKFWQREAANLRQQLLELQENHRKLMGEELYGMIVNDLDGLETQLEASLRGVRLKKEKMLTEEIQELSRKGSYVHEQNVELYKKVK 171
                 3678899**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGRGKIAIKR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGRLHEFSNT  60
SMKSIIERYN KTKEEQDQLR NPASEIKFWQ REAANLRQQL LELQENHRKL MGEELYGMIV  120
NDLDGLETQL EASLRGVRLK KEKMLTEEIQ ELSRKGSYVH EQNVELYKKV KLIEQENMEL  180
YRKAYGARNA SSVNGAGFAP YSRELHGPIM LHLSPPAAES LETPERATES R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.19e-98MIKC_MADS family protein