PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN07842.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23734.3 Da    PI: 9.2193
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN07842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-211663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr g++KKA+EL++LC++e+a+ +fs+ gk++ +
  PIN07842.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIFVFSPAGKVFSF 63
                68889999*************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MAKKPSMGRQ KIKIEKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IFVFSPAGKV  60
FSFGHPNVDS IIDMYLTRNP APNSNDPFNL VKAQRNVTVK ELNLQLGQIM NEIELERKRD  120
ENLDNLRKTN ERQCWWEGPV EKLGLGELEQ LRDAMEELKK NVAQQVNKLM NTPPAIFAAN  180
GGAVLDQYES KPGQGIVVPG GNGGFGYCHG FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-53M-type_MADS family protein