PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08087.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 236aa    MW: 25332.2 Da    PI: 6.8344
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.8e-40411421101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+ael+l++
  PIN08087.1  41 PCGACKFLRRKCISGCIFAPHFSSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTISYEAQARLSDPVYGCVSTIFALQQQVASLQAELSLVQ 139
                 7************************989**********************************************************************9 PP

      DUF260  99 eel 101
                 ++l
  PIN08087.1 140 TQL 142
                 885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDVPQGDGTS ENRRKGPGKR CAASHVEAAA TANGSPPANA PCGACKFLRR KCISGCIFAP  60
HFSSDQGAAR FAAVHKVFGA SNVSKLLLHI PANRRHDAVV TISYEAQARL SDPVYGCVST  120
IFALQQQVAS LQAELSLVQT QLINSRLVMA NALQNSPQQQ QHINAAVLQP AYSNNSSASN  180
NLISMHSFSH NFGSEITAPS NSFEPIPHLS GQALHDEDEE EEESHDPLAF ANHIFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-74LBD family protein