PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08141.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GATA
Protein Properties Length: 293aa    MW: 31640.2 Da    PI: 8.2636
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18210244135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  PIN08141.1 210 CLHCQADKTPQWRAGPMGPKTLCNACGVRYKSGRL 244
                 99*****************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDILDTAGGC FVVDDDLLNF NLEGEVEEDE DPKSIFKGAS ASSSSSNPSM ATAVLGHGSR  60
AGGGSFSEFV EEELEWLSNK DAFPAVETCF GILSDNPELV MNQQSPVSVL ENSSSNSSNA  120
NSNSNSSSNG NGSTIASCCG SLKVPANFPV RSRSKRRRRR RRAGFDELLS QQCLWLNQVN  180
VENKRESSSS FSLPPLSKVR SSGTSMGRRC LHCQADKTPQ WRAGPMGPKT LCNACGVRYK  240
SGRLLPEYRP ANSPTFSSTL HSNSHRKVIE MRKQKQLPGG GIMGNEACGY RVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RSRSKR
2153162RSKRRRRRRR
3155160KRRRRR
4155161KRRRRRR
5156162KRRRRRR
6156161RRRRRR
7156162RRRRRRR
8157162RRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-43GATA family protein