PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08171.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26217.5 Da    PI: 7.2393
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.7e-121247540
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                ++ +r+ tf kR ng+lK A+ LS+LC++++ +++ 
  PIN08171.1 12 SDERRNATFEKRANGLLKNANDLSILCGVDIGIVVH 47
                5789***************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MTRKRIKHEQ VSDERRNATF EKRANGLLKN ANDLSILCGV DIGIVVHRQG GPNNEILWPS  60
PSIFRERLQR FMDFPQSERS RKMVTHDKYV EQTMNSEAQD VPKLEKKVVL KESHQLLNEV  120
VQGKSIEELD MYQLNGLSSL VDEMLEMIEK KENQLNQEGT SASVPQEVGT SWSVPQEVGT  180
SWPVPQEVGT SSSVPPEVHL RSVRRGRRGR PRSDAQRGDM DISSPHHGFA P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-16M-type_MADS family protein