PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN08339.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 28160.8 Da PI: 9.4642

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN08339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.6e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ PIN08339.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 74 79***********************************************8 PP
2	K-box	98.9	7.1e-33	93	189	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s++ea+++ +qqe++kL+++i+++q+++R++lGe+++++ l+eL+++e ++ek++++iRskKnell+++ie +qk+e el+++n++Lr+k++e PIN08339.1 93 SNSMSTSEANTQFYQQEASKLRRQIREIQTSNRQILGEGVSNMPLRELRNMEGKVEKAISRIRSKKNELLFAEIELMQKRELELHNANMYLRAKIAE 189 4455599***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MEFPSQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSTRGRL YEYANNSVKA TIDRYKKATA DSSNSMSTSE ANTQFYQQEA SKLRRQIREI 120 QTSNRQILGE GVSNMPLREL RNMEGKVEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN 180 MYLRAKIAEN ERAQEQMNLM PGSSEYQQPM TSQSYDVRNF LPLNFVEPNE HYSCQDQTPL 240 QLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-114	MIKC_MADS family protein