PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08586.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 132aa    MW: 14559.8 Da    PI: 9.424
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.5e-141762449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                e k+n qv f++ r g++ KA ELSvLC+ + a+++ s+ +k++ +
  PIN08586.1 17 EKKTNPQVAFCNSRLGLFRKAGELSVLCGSNTAILVQSPADKIFGF 62
                889************************************9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    
MDNMCPSKKT MGRRKFEKKT NPQVAFCNSR LGLFRKAGEL SVLCGSNTAI LVQSPADKIF  60
GFGIPSVESA LHRFRTGDNL GTSSGPTLGP TLSLVKTAML STRKRLEEIE KVKLDDLSDL  120
FDFPLEFNDS PF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-16M-type_MADS family protein