PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN08984.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 219aa MW: 25376.3 Da PI: 9.1752

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN08984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.3	6.1e-34	10	107	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCa Ck++r+kC+++C+lap fpae++++f++vhk+FG+snv+k++k+l+ee+r +a++slv+eA r+r+Pv G +g ++++ ++l+ k++ ++ + PIN08984.1 10 ACATCKHQRKKCTEKCILAPFFPAEKTQEFQAVHKVFGVSNVTKIIKNLKEEDRARAIDSLVWEALSRQREPVLGPYGEYRRVFEELRFYKTQFQQFQ 107 7***********************************************************************************99999999887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MHRTTNNTSA CATCKHQRKK CTEKCILAPF FPAEKTQEFQ AVHKVFGVSN VTKIIKNLKE 60 EDRARAIDSL VWEALSRQRE PVLGPYGEYR RVFEELRFYK TQFQQFQQIQ NQGRIMGWNN 120 NNGMTMNRGG MINNNNSNNN ENNTLNNIHG NGNFFPYSYS SHHIQEDEKI RAERDNASAI 180 IIPQQHLANG FNQQFFIAGQ YNRMETKSME STLWEGSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-46	LBD family protein