PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN09498.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

RAV

Protein Properties

Length: 357aa MW: 39552.2 Da PI: 9.2267

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN09498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.3	9.1e-14	59	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g PIN09498.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 107 689*9788.8*****3.....5***********************98 PP
2	B3	102.4	2.5e-32	183	285	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae+h +g+ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ +++l++ PIN09498.1 183 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGNVSKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKDLRAGDIVSFQRSTGPDKQLYID 281 89**************************6677899************************************************887688888888 PP EE-S CS B3 96 vfrk 99 + ++ PIN09498.1 282 WKSR 285 7665 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDASSTDETA TSDSLSITLG STSPAAQPRD SLCRVGSGAS VIIDAENGVE AESRKLPSSR 60 FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDT AAQRFRGRDA VTNFKQSEED 120 EIETAFLNSH LKTEIVDMLR KHTYNDELEQ SRRNYGGKRT AKDGGAGYSR GGDMVDKARE 180 HLFEKAVTPS DVGKLNRLVI PKQHAEKHFP LQSGNVSKGV LLNFEDIGGK VWRFRYSYWN 240 SSQSYVLTKG WSRFVKEKDL RAGDIVSFQR STGPDKQLYI DWKSRNNGSN FAVESGRAQP 300 VQMVRLFGVN IFEIPSNGGG GGGAAIDGSD RCGGKRMREM EILGLVCSKK QRVIDAL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDASSTDETA TSDSLSITLG STSPAAQPRD SLCRVGSGAS VIIDAENGVE AESRKLPSSR  60
FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDT AAQRFRGRDA VTNFKQSEED  120
EIETAFLNSH LKTEIVDMLR KHTYNDELEQ SRRNYGGKRT AKDGGAGYSR GGDMVDKARE  180
HLFEKAVTPS DVGKLNRLVI PKQHAEKHFP LQSGNVSKGV LLNFEDIGGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKDL RAGDIVSFQR STGPDKQLYI DWKSRNNGSN FAVESGRAQP  300
VQMVRLFGVN IFEIPSNGGG GGGAAIDGSD RCGGKRMREM EILGLVCSKK QRVIDAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-152	RAV family protein