PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN09890.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 419aa MW: 48859.2 Da PI: 7.1824

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN09890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	159	182	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++++Lk+H + H PIN09890.1 159 YICSVCGRKCKTQMDLKKHFKQlH 182 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MATIINSVER LPLKPQFPFS GHPSHAHKQK LNFEKLPFNF CTRITLSNRK SYRWHPVKSC 60 ISNQEIDMVK TREGVYAAKA KKVVVLWDLD NKPPRGPPYE AALALKSMAQ KFGDVIDMSA 120 YANRHAFIHL PQWVVEERRE RRHLDFLERK GLATPSEPYI CSVCGRKCKT QMDLKKHFKQ 180 LHERERQKKL NRMRSLKGKK RQRFKERFID GNEKYNEAAR TLLTPKIGYG LAQELKRAGV 240 YVKTVQDKPQ AADWALKRQM LHSMSRGVDW IVLVSDDSDF SEMLRKAREA NLGTVVVGDR 300 DRALGRHADV WLSWLRVENG EIKEHDLELK SEDWRDLDER QRATFSVSEF NGDLASVEQS 360 LDELVGHMEF NGLKISSFDE GEEEYEEEDD WTRKRLDKGD DSDEEEEGDY LLDSEDENF

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MATIINSVER LPLKPQFPFS GHPSHAHKQK LNFEKLPFNF CTRITLSNRK SYRWHPVKSC  60
ISNQEIDMVK TREGVYAAKA KKVVVLWDLD NKPPRGPPYE AALALKSMAQ KFGDVIDMSA  120
YANRHAFIHL PQWVVEERRE RRHLDFLERK GLATPSEPYI CSVCGRKCKT QMDLKKHFKQ  180
LHERERQKKL NRMRSLKGKK RQRFKERFID GNEKYNEAAR TLLTPKIGYG LAQELKRAGV  240
YVKTVQDKPQ AADWALKRQM LHSMSRGVDW IVLVSDDSDF SEMLRKAREA NLGTVVVGDR  300
DRALGRHADV WLSWLRVENG EIKEHDLELK SEDWRDLDER QRATFSVSEF NGDLASVEQS  360
LDELVGHMEF NGLKISSFDE GEEEYEEEDD WTRKRLDKGD DSDEEEEGDY LLDSEDENF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	179	RRERRHLDFLERKGLATPSEPYICSVCGRKCKTQMDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-155	C2H2 family protein