PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN09963.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 143aa    MW: 17231.1 Da    PI: 9.5933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN09963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.9e-12949141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                k+i+n++ ++vtf k  + ++KKA+ LS+LC++++ +++  
  PIN09963.1  9 KKISNEREKNVTFVKTVESLIKKANDLSILCGVDIGIVVHK 49
                68**********************************99965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MPRKRVSHKK ISNEREKNVT FVKTVESLIK KANDLSILCG VDIGIVVHKP TEYNAVLWPN  60
PEIFHERMQK FLRISERERA KKMMTHDKFL KKKLNDEKED MQKYQNKNYM NESCLLMNEL  120
FANDEMLKKI QKKEEEIDNY HEM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.16e-16M-type_MADS family protein