PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN10025.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 242aa    MW: 26909.9 Da    PI: 9.9714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN10025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.5e-181050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+
  PIN10025.1 10 FIANDSARKATYKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                899*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MTRKKVKLAF IANDSARKAT YKKRKKGLMK KVSELSTLCG IDACAIIYSP YEAQPEMWPD  60
NGGARRVLAQ FKRMPEMEQS KKMVNQESFI RHRISKAADQ LKKLHKDNRE KEITHLMYQC  120
LTGKGLQGMA LPELNDMGWL LDQNLREIYK RIEELKKAAP PGNGVEQKPA VVELGGGGGG  180
GGMQRGPQQW FTEWMGANVS DNNQMGGPFG HGGGGGGDHE MIMPFNDGNN HAAAMWSNVF  240
FP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFIANDSARKATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-58M-type_MADS family protein