PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN10459.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27647.2 Da    PI: 9.5826
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN10459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.99.7e-322171151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  PIN10459.1 21 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 71
                79***********************************************95 PP
2K-box107.31.8e-35891864100
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkklee 100
                 s++ s  ea+++++qqe++kL+++i+nLq+e+R++lGe+L+ Lsl+eL++Le+++ek+++kiRs+Knell+++ie +qk+ e +l+++n++Lr+k++e
  PIN10459.1  89 SNNGSMVEANTQYYQQEASKLRAQIRNLQTENRNMLGESLGALSLRELKNLETKVEKGISKIRSRKNELLFAEIECMQKRqEIDLHHNNQYLRAKIAE 186
                 344448999********************************************************************9984679***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTFQSEISSD RKIGRGKIEI KRIENTTNRQ VTFCKRRNGL LKKAYELSVL CDAEVALIVF  60
SSRGRLYEYS NNSVKATIER YKKATSDSSN NGSMVEANTQ YYQQEASKLR AQIRNLQTEN  120
RNMLGESLGA LSLRELKNLE TKVEKGISKI RSRKNELLFA EIECMQKRQE IDLHHNNQYL  180
RAKIAETERA QQHMNLMPGN SDYDLVHPQP FDARDYLQVN GLQPNNDYSR QDQPPLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-105MIKC_MADS family protein